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发布于:2019-4-1 16:36:16  访问:2 次 回复:0 篇
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Us Novosphingobium.{Keywords|Key phrases|Keywords and phrases|Search phrases|Keyword
The biggest genome was 6.95 Mbp, belonging to Novosphingobium rosa NBRC 15208 isolated from rhizospheric soil. The buy MLN 8237 smallest genome was 3.71 Mbp, PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/20463019 belonging to N. acidiphillum DSM19966, which was isolated in the acidic lake water. So that you can investigate no matter if specific adaptive traits follow the environment-specific or habitat-specific PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/25816071 phenotype, 27 Novosphingobium strains had been grouped depending on their isolation habitat. Of these 27 strains, 19 strains had been grouped in one of the 4 distinctive habitats, i.e., rhizosphere (strains AP12, P6W, and NBRC15208), contaminated soil (strains LL02, LE124, NBRC102051, KN65.2, and ST904), freshwater (strains AAP1, AAP83, AAP93, FNE08-7, DSM12444, and DSM19966), and marine water (strains MBES04, Musc273, DSM12447, US6-1, and PP1Y). The remaining eight strains (B-7, Leaf2, DSM13790, KF1, Rr2-17, NBRC 16725, NBRC 12533, and NBRC 107847) have been excluded, as either there was no information and facts readily available on their isolation site or less than 3 representatives were obtainable to represent a habitat (Table 1). purchase AG 1343 Mesylate Focusing around the habitats, the largest genomes have been found in the rhizosphere (6.37 0.56 Mbp; n 3), followed by contaminated soil (five.34 0.55 Mbp; n 5), marine water (five.21 0.24 Mbp; n 5), and freshwater (four.20 0.34 Mbp; n 6). Average genome size differed substantially involving habitats (F3,15 16.89 and P 0.0001 by evaluation of variance [ANOVA]); it has previously been correlated with environmental complexity where the largest genomes are found in rhizospheric soil (18).Us Novosphingobium.Keywords Novosphingobium, core genome, habitat-specific genes, pangenome, regulatory hubshe
Us Novosphingobium.Search phrases Novosphingobium, core genome, habitat-specific genes, pangenome, regulatory hubshe genus Novosphingobium represents metabolically versatile members that belong for the class Alphaproteobacteria and family members Sphingomonadaceae (1). Novosphingobium species have already been isolated from a wide range of ecological habitats which include agricultural soil (two), pesticide-contaminated soil (3, four), plant surfaces (five), and aquatic environments (6) (see Table 1). Earlier studies have investigated Novosphingobium strains for their bioremediation capacity (7?0), nutrient cycling (11, 12), taxonomic characterization (3, 13), analysis of extracellular solutions (7), mutagenesis experiments on certain genes or gene clusters (14), disease circumstances (15, 16), and application in nanoparticle formation for antibacterial activity (17). Several Novosphingobium genomes are now offered in public repositories (e.g., GenBank), and lately, Gan and colleagues (19) performed comparative genomic evaluation where six Novosphingobium genomes were in comparison with elucidate the mechanism of salt tolerance, cell-cell signaling, and aromatic compound biodegradation. To further improve our understanding with the metabolic versatility of this genus and to decide how this versatility is distributed by phylogeny and habitat, we selected 27 Novosphingobium genomes from diverse habitats and classified a subset of those strains into 4 various ecological groups--rhizosphere, contaminated soil, freshwater, and marine water. We then determined no matter whether core metabolic trait distribution was influenced much more by habitat or phylogenetic clustering. Results AND DISCUSSION Common genomic organization of Novosphingobium strains. The 27 Novosphingobium strains had an average genome size of four.97 Mbp. The biggest genome was 6.95 Mbp, belonging to Novosphingobium rosa NBRC 15208 isolated from rhizospheric soil.
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